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2023

• Zhao J., Huang K., Liu R., Lai Y., Abad P., Favery B., Jian H., Ling J., Li Y., Yang Y., Xie B., Quentin M.*, Mao Z.* (2023) A root-knot nematode effector Mi2G02 hijacks a host plant trihelix transcription factor for nematode parasitism. Plant Communications. https://doi.org/10.1016/j.xplc.2023.100723, https://hal.inrae.fr/hal-04221995, OA (* co-corresponding authors)
• Chen Y.P., Liu Q., Sun X., Liu L., Zhao J., Yang S., Wang X., Quentin M., Abad P., Favery B.*, Jian H.* (2023) Meloidogyne enterolobii MeMSP1 effector targets the glutathione-S-transferase phi GSTF family in Arabidopsis to manipulate the host metabolism and promote nematode parasitism. New Phytologist in press (* co-corresponding authors).
• Noureddine Y., da Rocha M., An J., Medina C., Mejias J., Mulet, K., Quentin M., Abad P., Zouine M., Favery B., Jaubert‐Possamai S. (2023). AUXIN RESPONSIVE FACTOR8 regulates development of the feeding site induced by root knot nematodes in tomato. Journal of Experimental Botany https://dx.doi.org/10.1093/jxb/erad208, https://hal.inrae.fr/hal-04227771.
• Oota M., Toyoda S., Kotake T., Wada N., Hashiguchi M., Akashi R., Ishikawa H., Favery B., Tsai A.-L., Sawa S. (2023). Rhamnogalacturonan-I as a nematode chemoattractant from Lotus corniculatus L. super-growing root culture. Frontiers in Plant Science, 13, https://dx.doi.org/10.3389/fpls.2022.1008725, https://hal.inrae.fr/hal-04070738, OA
• Bovio E, Rancurel C, Seassau A, Magliano M, Gislard M, Loisier A, Kuchly C, Ponchet M, Danchin EGJ, Van Ghelder C. (2023) Genome sequence and annotation of Periconia digitata a hopeful biocontrol agent of phytopathogenic oomycetes. Scientific Data. 2023 Sep 6;10(1):583. https://dx.doi.org/10.1038/s41597-023-02440-4.
• Esmenjaud D., Banora M.Y., Julien-Portier U., Das-Dores Lafargue M., Tandonnet J.P., Rubio B., Walker A., Van Ghelder C., Ollat N. (2023) A muscadine locus confers resistance to predominant species of grapevine root-knot nematodes (Meloidogyne spp.) including virulent populations. Vol. 57 No. 3 (2023): OENO One. https://doi.org/10.20870/oeno-one.2023.57.3.7443
• Leslie K., Mantelin S., Eves-van den Akker S. & Jones J.T. (2023). Characterisation of arabinogalactan endo β 1,4 galactanases from Globodera rostochiensis, Globodera pallida and Rotylenchulus reniformis. Physiological and Molecular Plant Pathology 123, Article 101930. https://dx.doi.org/10.1016/j.pmpp.2022.101930, https://hal.inrae.fr/hal-04230005.
• Green P., Montague G., McNamara G., Davies B., Fiore A., Sturrock K., Ledbetter M., Hein I., Mantelin S., Harrower B., M. Knott M., Higgins S. & Stott K. (2023). Fryer control strategy improvement: Towards acrylamide reduction in crisp manufacture. Food and Bioproducts Processing 137: 177-188. https://dx.doi.org/10.1016/j.fbp.2022.11.010, https://hal.inrae.fr/hal-04230016.
• Verhoeven Ava, Finkers‐Tomczak Anna, Prins Pjotr, Valkenburg‐van Raaij Debbie R., van Schaik Casper C., Overmars Hein, van Steenbrugge Joris J. M., Tacken Wannes, Varossieau Koen, Slootweg Erik J., Kappers Iris F.,, Goverse Aska, Sterken Mark G., Smant Geert. (2023). The root‐knot nematode effector MiMSP32 targets host 12‐oxophytodienoate reductase 2 to regulate plant susceptibility. New Phytologist. 237(6):2360-2374 https://dx.doi.org/doi:10.1111/nph.18653

2022

• Verhoeven, A., Finkers-Tomczak, A., Prins, P., Valkenburg-van Raaij, D., van Schaik, C., Overmars, H., van Steenbrugge, J., Tacken, W., Varossieau, K., Slootweg, E., Kappers, I., Quentin, M.,  Goverse, A., Sterken, M., Smant, G. (2022) The root-knot nematode effector MiMSP32 targets host 12-oxophytodienoate reductase 2 (OPR2) to regulate plant susceptibility. New Phytologist, In press, https://nph.onlinelibrary.wiley.com/doi/epdf/10.1111/nph.18653
• Despot-Slade E, Širca S, Mravinac B, Castagnone-Sereno P, Plohl M, Meštrović N (2022) Satellitome analyses in nematodes illuminate complex species history and show conserved features in satellite DNAs. BMC biology 20 (1), 1-19 https://doi.org/10.1186/s12915-022-01460-7
• Banora M.Y,  Voisin R.,  Nguyen VC,  Portier U,  Bernabo C,  Van Ghelder C,  Das Dores Lafargue M,  Tandonnet JP,  Demangeat G,  Ollat N,  Esmenjaud D (2022) Xiphinema index-resistant grapevine materials derived from muscadine are also resistant to a population of X. diversicaudatum Vol. 56 No. 4 (2022): OENO One https://doi.org/10.20870/oeno-one.2022.56.4.5489
• Mejias, J., Chen, Y.P., Bazin, J., Truong, N-M., Mulet, K., Y. Noureddine, Jaubert-Posamai, S., Ranty-Roby, S., Soulé S, Abad, P., Crespi, M., Favery, B.* and Quentin, M.* (2022) Silencing the conserved SmD1 target gene alters susceptibility to root-knot nematodes in plants. BioRxiv.: https://doi.org/10.1101/2020.11.25.398149; Plant Physiology. 189: 1741–1756. https://doi.org/10.1093/plphys/kiac155 PMID: 35385078. * co-corresponding authors.
• Noureddine, Y., Mejias, J., da Rocha, M., Thomine, S., Quentin, M., Abad, P., Favery, B., Jaubert-Possamai, S. (2022) Copper microRNAs modulate the formation of giant feeding cells induced by the root knot nematode Meloidogyne incognita in Arabidopsis thaliana (BioRxiv. https://doi.org/110.1101/2021.10.25.465754); New Phytologist 236: 283–295 http://doi.org/10.1111/nph.18362. PMID: 35801827. 
• Leslie K., Mantelin S., Eves-van den Akker S., Jones J.T. (2022) Characterisation of arabinogalactan endo β 1,4 galactanases from Globodera rostochiensis, Globodera pallida and Rotylenchulus reniformis. Physiological and Molecular Plant Pathology 123 (2023) 101930. https://doi.org/10.1016/j.pmpp.2022.101930
• Nguyen HT, Mantelin S, Ha CV, Lorieux M, Jones JT., Mai CD and Bellafiore S (2022) Insights Into the Genetics of the Zhonghua 11 Resistance to Meloidogyne graminicola and its Molecular Determinism in Rice. Frontiers in Plant Science 13. https://doi.org/10.3389/fpls.2022.854961
• Nguyen, P.V., Biên T.L.T., Tôn L.B., Lê Ð.Ð., Wright M.K., Mantelin S., Petitot A.-S., Fernandez D. & Bellafiore S. (2022) Meloidogyne-SP4 effector gene silencing reduces significantly reproduction of root-knot nematodes in rice (Oryza sativa). Nematology. https://doi.org/10.1163/15685411-bja10152
• TAMISIER L., SZADKOWSKI M., GIRARDOT G., DJIAN‐CAPORALINO C., PALLOIX A., HIRSCH J., MOURY B. (2022). Concurrent evolution of resistance and tolerance to potato virus Y in Capsicum annuum revealed by genome‐wide association. Molecular Plant Pathology. 23. 254–264. https://doi.org/10.1111/mpp.13157

2021

• DETREY J., COGNARD V., DJIAN-CAPORALINO C., MARTEU N., DOIDY J., POURTAU J., VRIET C., MAUROUSSET L., BOUCHON D., & CLAUSE J. 2021. Growth and root-knot nematode infection of tomato are influenced by mycorrhizal fungi and earthworms in an intercropping cultivation system with leeks. Applied Soil Ecology. c. 104181. 10.1016/j.apsoil.2021.104181
• HASSANALY-GOULAMHOUSSEN Rahim, AUGUSTO Ronaldo De Carvalho, MARTEU-GARELLO Nathalie, PÉRÉ Arthur, FAVERY Bruno, DA ROCHA Martine, DANCHIN Etienne, ABAD Pierre, GRUNAU Christoph, PERFUS-BARBEOCH Laetitia, DE CARVALHO AUGUSTO Ronaldo. 2021. Chromatin landscape dynamics in the early development of the plant parasitic nematode Meloidogyne incognita. Frontiers in Cell and Developmental Biology. 9. 765690. 10.1101/2021.05.11.443567
• TRUONG Nhat, CHEN Yongpan, MEJIAS Joffrey, SOULÉ Salomé, MULET Karine, JAOUANNET Maëlle, JAUBERT-POSSAMAI Stéphanie, SAWA Shinichiro, ABAD Pierre, FAVERY Bruno, QUENTIN Michaël. 2021. The Meloidogyne incognita Nuclear Effector MiEFF1 Interacts With Arabidopsis Cytosolic Glyceraldehyde-3-Phosphate Dehydrogenases to Promote Parasitism. Frontiers in Plant Science. 12. 641480. 10.3389/fpls.2021.641480
• DA ROCHA Martine, BOURNAUD Caroline, DAZENIERE Julie, THORPE Peter, BAILLY-BECHET Marc, PELLEGRIN Clément, PERE Arthur, GRYNBERG Riscila, PERFUS-BARBEOCH Laetitia, EVES Van Den AKKER Sebastian, DANCHIN Etienne. 2021. Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes. Genes. 12, 5. 771. https://doi.org/10.3390/genes12050771
• COKE Mirela C, MANTELIN Sophie, THORPE Peter, LILLEY Catherine J, WRIGHT Kathryn M, SHAW Daniel S, CHANDE Adams, JONES John T & URWIN Peter E . 2021. The GpIA7 effector from the potato cyst nematode Globodera pallida targets potato EBP1 and interferes with the plant cell cycle. Journal of Experimental Botany . 72. 7301-7315. 10.1093/jxb/erab353.
• DESPOT-SLADE Evelin, MRAVINAC Brankica, ŠIRCA Saša, CASTAGNONE-SERENO Philippe, PLOHL Miroslav, MEŠTROVIĆ Nevenka. 2021. The Centromere Histone Is Conserved and Associated with Tandem Repeats Sharing a Conserved 19-bp Box in the Holocentromere of Meloidogyne Nematodes. Molecular Biology and Evolution. 38, 5. 1943-1965. 10.1093/molbev/msaa336
• TAMISIER L., SZADKOWSKI M., GIRARDOT G., DJIAN-CAPORALINO C., PALLOIX A., HIRSCH J., MOURY B. 2021. Concurrent evolution of resistance and tolerance to potato virus Y in Capsicum annuum revealed by genome-wide association. Molecular Plant Pathology. 0. 44866. 10.1111/mpp.13157
• SAUCET Simon Bernard, ESMENJAUD Daniel, VAN GHELDER Cyril. 2021. Integrity of the Post-LRR Domain Is Required for TIR-NB-LRR Function. Molecular Plant-Microbe Interactions. 34.3. 286-296. 10.1094/MPMI-06-20-0156-R
• SAINTENAC Cyrille, CAMBON Florence, AOUINI Lamia, VERSTAPPEN Els, GHAFFARY Seyed Mahmoud Tabib, POUCET Théo, MARANDE William, BERGES Hélène, XU Steven, JAOUANNET Maëlle, FAVERY Bruno, ALASSIMONE Julien, SÁNCHEZ-VALLET Andrea, FARIS Justin, KEMA Gert, ROBERT Oliver, LANGIN Thierry. 2021. A wheat cysteine-rich receptor-like kinase confers broad-spectrum resistance against Septoria tritici blotch. Nature Communications. 12, 1. 433. 10.1038/s41467-020-20685-0
• ZHAO Jianlong, SUN Q, QUENTIN Michaël, LING J, ABAD Pierre, ZHANG X, LI Y, YANG Y, FAVERY Bruno, MAO Z, XIE BA. 2021. A Meloidogyne incognita C-type lectin effector targets plant catalases to promote parasitism. New Phytologist. 232. 2124-2137. 10.1111/NPH.17690
• MEJIAS Joffrey, BAZIN Jérémie, TRUONG Nhat‐My, CHEN Yongpan, MARTEU Nathalie, BOUTEILLER Nathalie, SAWA Shinichiro, CRESPI Martin, VAUCHERET Hervé, ABAD Pierre, FAVERY Bruno, QUENTIN Michaël. 2021. The root‐knot nematode effector MiEFF18 interacts with the plant core spliceosomal protein SmD1 required for giant cell formation. New Phytologist. 229, 6. 3408-3423. 10.1111/nph.17089
• NGUYEN Van Chung, KHALLOUK Samira, POLIDORI Joel, TRUCH Julia, PORTIER Ulysse, LAFARGUE Maria, TANDONNET Jean-Pascal,  OLLAT Nathalie, VAN GHELDER Cyril,  BANORA Mohamed Youssef, ESMENJAUD Daniel. 2021. Evidence of Sexual Reproduction Events in the Dagger Nematode Xiphinema index in Grapevine Resistance Experiments Under Controlled Conditions. Plant Disease. 105.9. 2664-2669. 10.1094/PDIS-06-20-1409-RE
• Maria E. Lisei-de-Sá, Carolina V. Morgante, Bruno Paes de Melo, Isabela T. Lourenço-Tessutti, Fabricio B. M. Arraes, Rafael Galbieri, Leonardo L. P. Macedo, Thuanne P. Ribeiro, Rodrigo R. Fragoso, Maria C. M. Silva, Janice de Almeida-Engler and Maria F. Grossi-de-Sa. 2021. Pyramiding dsRNAs increases phytonematode tolerance in cotton plants. Planta. 254. 121. https://doi.org/10.1007/s00425-021-03776-0.
• Vieira P, Myers RY, Pellegrin C, Wram C, Hesse C, Maier TR, Shao J, Koutsovoulos GD, Zasada I, Matsumoto T, Danchin EGJ, Baum TJ, Eves-van den Akker S, Nemchinovet LG. 2021. Targeted transcriptomics reveals signatures of large-scale independent origins and concerted regulation of effector genes in Radopholus similis. 17(11): e1010036. 2021. PLos Pathogens. 17.11. https://doi.org/10.1371/journal.ppat.1010036
• SIMION Paul, NARAYAN Jitendra, HOUTAIN Antoine, DERZELLE Alessandro, BAUDRY Lyam, NICOLAS Emilien, ARORA Rohan, CARIOU Marie, CRUAUD Corinne, RODRIGUEZ GAUDRAY Florence, GILBERT Clément, GUIGLIELMONI Nadège, HESPEELS Boris, KOZLOWSKI Djampa, LABADIE Karine, LIMASSET Antoine, LLIRÓS Marc, MARBOUTY Martial, TERWAGNE Matthieu, VIRGO Julie, CORDAUX Richard, DANCHIN Etienne, HALLET Bernard, KOSZUL Romain, LENORMAND Thomas, FLOT Jean-Francois, VAN DONINCK Karine. 2021. Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga. Science Advances. 7, 41. eabg4216. 10.1126/sciadv.abg4216
• MELO, B. P., LOURENÇO-TESSUTTI, I. T., FRAGA, O. T., PINHEIRO, L. B., DE JESUS LINS, C. B., MORGANTE, C. V., ENGLER, J. A., REIS, P., GROSSI-DE-SA, M. F., & FONTES, E. 2021. Contrasting roles of GmNAC065 and GmNAC085 in natural senescence, plant development, multiple stresses and cell death responses. Scientific Reports. 11. 11178. doi.org/10.1038/s41598-021-90767-6.
• GARTNER Ulrike, HEIN Ingo, BROWN Lynn H, CHEN Xinwei, MANTELIN Sophie, SHARMA Sanjeev K, DANDURAND Louise-Marie, KUHL Joseph C, JONES John T, BRYAN Glenn J, BLOK Vivian C. 2021. Resisting potato cyst nematodes with resistance. Frontiers in Plant Sciences. 12. Article 483. 10.3389/fpls.2021.661194
• ESMENJAUD Daniel. 2021. Deciphering resistance to root-knot nematodes in Prunus for rootstock breeding: Sources, genetics and characterization of the Ma locus. Horticulturae . 7, 564. 10.3390/horticulturae7120564
• FREI DIT FREY Nicolas, FAVERY Bruno. 2021. Plant‐parasitic nematode secreted peptides hijack a plant secretory pathway. New Phytologist. 229, 1. 41579. 10.1111/nph.16842
• MONTARRY Josselin, MIMEE Benjamin, DANCHIN Etienne, KOUTSOVOULOS Georgios, STE-CROIX Dave, GRENIER Eric. 2021. Recent Advances in Population Genomics of Plant-Parasitic Nematodes. Phytopathology. 111, 1. 40-48. 10.1094/PHYTO-09-20-0418-RVW

2020

• Arraes F.B.M., Martins-de-Sa D., Noriega Vasquez D.D., Paes Melo B., Faheem M., Lima Pepino de Macedo L., Morgante C.V., Barbosa J.A.R.G., Coiti Togawa R., Moreira V.J.V, Danchin E.G.J., Grossi-de-Sa M.F. Dissecting Protein Domain Variability In The Core RNA Interference Machinery Of Five Insect Orders. RNA Biology. 2020. (View Online).
• Baldacci-Cresp, F., M. Behr, A. Kohler, N. Badalato, K. Morreel, G. Goeminne, A. Mol, J. de Almeida Engler, W. Boerjan, M. El Jaziri and M. Baucher (2020). “Molecular Changes Concomitant with Vascular System Development in Mature Galls Induced by Root-Knot Nematodes in the Model Tree Host Populus tremula * P. alba.” International journal of molecular sciences 21(2).
• Basso MF, Lourenço-Tessutti IT, Mendes RAG, Pinto CEM, Bournaud C, Gillet FX, Togawa RC, de Macedo LLP, de Almeida Engler J, Grossi-de-Sa MF. MiDaf16-like and MiSkn1-like gene families are reliable targets to develop biotechnological tools for the control and management of Meloidogyne incognita. (2020) Scientific Report. Apr 24;10(1):6991. doi: 10.1038/s41598-020-63968-8. PMID: 32332904; PMCID: PMC7181638.
• Behr M, Baldacci-Cresp F, Kohler A, et al. Alterations in the phenylpropanoid pathway affect poplar ability for ectomycorrhizal colonisation and susceptibility to root-knot nematodes. Mycorrhiza. 2020 Sep;30(5):555-566. DOI: 10.1007/s00572-020-00976-6.
• Cabral, Danila & Banora, Mohamed & Antonino, José & Rodiuc, Natalia & Vieira, Paulo & Ramos Coelho, Roberta & Chevalier, Christian & Eekhout, Thomas & Engler, Gilbert & Veylder, Lieven & Grossi-de-Sá, Maria & Engler, Janice. (2019). The plant WEE1 kinase is involved in checkpoint control activation in nematode induced galls. New Phytologist. 225. 10.1111/nph.16185.
• de Melo BP, Lourenço-Tessutti IT, Paixão JFR, et al. Transcriptional modulation of AREB-1 by CRISPRa improves plant physiological performance under severe water deficit. Scientific Reports. 2020 Oct;10(1):16231. DOI: 10.1038/s41598-020-72464-y.
• Favery, B., Dubreuil, G., Chen M.-S., Giron, D., Abad, P. (2020). Gall-Inducing Parasites: Convergent and Conserved Strategies of Plant Manipulation by Insects and Nematodes. Annual Review of Phytopathology, 58, 1-22. https://doi.org/10.1146/annurev-phyto-010820-012722. PMID: 32853101
• Firmino AAP, Pinheiro DH, Moreira-Pinto CE, Antonino JD, Macedo LLP, Martins-de-Sa D, Arraes FBM, Coelho RR, Fonseca FCA, Silva MCM, Engler JA, Silva MS, Lourenço-Tessutti IT, Terra WR, Grossi-de-Sa MF. RNAi-Mediated Suppression of Laccase2 Impairs Cuticle Tanning and Molting in the Cotton Boll Weevil (Anthonomus grandis). 2020 Front Physiol. Nov 16;11:591569. doi: 10.3389/fphys.2020.591569. PMID: 33329040; PMCID: PMC7717984.
• Frei dit Frey, N, Favery, B. (2020). Commentary: Plant-parasitic nematode secreted peptides hijack a plant secretory pathway. New Phytologist, 229, 11-13. https://doi.org/10.1111/nph.16842. PMID: 32860721.
• Nguyen VC, Khallouk S, Polidori J, Truch J, Portier U, Lafargue M, Tandonnet JP, Ollat N, Van Ghelder C, Youssef Banora M, Esmenjaud D. Evidence of sexual reproduction events in the dagger nematode Xiphinema index in grapevine resistance experiments under controlled conditions. Plant Dis. 2020 Dec 15. doi: 10.1094/PDIS-06-20-1409-RE. PMID: 33320044
• Nguyen VC, Tandonnet JP, Khallouk S, Van Ghelder C, Portier U, Lafargue M, Banora MY, Ollat N, Esmenjaud D. Grapevine Resistance to the Nematode Xiphinema index Is Durable in Muscadine-Derived Plants Obtained from Hardwood Cuttings but Not from In Vitro. Phytopathology. 2020 Sep;110(9):1565-1571. doi: 10.1094/PHYTO-01-20-0008-R. Epub 2020 Jul 29. PMID: 32378451
• Oota M., Tsai A.Y-L, Aoki D., Matsushita Y., Toyoda, S., Fukushima K., Saeki K., Toda K., Perfus-Barbeoch L., Favery B., Ishikawa H. and Sawa S. (2020) Identification of naturally-occurring polyamines as nematode Meloidogyne incognita attractants. Molecular Plant, pii: S1674-2052(19)30407-1. https://doi: 10.1016/j.molp.2019.12.010. PMID 31891776.
• Rubio B, Lalanne-Tisné G, Voisin R, Tandonnet JP, Portier U, Van Ghelder C, Lafargue M, Petit JP, Donnart M, Joubard B, Bert PF, Papura D, Le Cunff L, Ollat N, Esmenjaud D. Characterization of genetic determinants of the resistance to phylloxera, Daktulosphaira vitifoliae, and the dagger nematode Xiphinema index from muscadine background. BMC Plant Biol. 2020 May 12;20(1):213. doi: 10.1186/s12870-020-2310-0. PMID: 32398088
• Sawa, S., Sato, M. H., Favery, B. (2020). Editorial: Developmental Modification under Biotic Interactions in Plants. Frontiers in Plant Science, 11, Article 619804. https://doi.org/10.3389/fpls.2020.619804.
• Zhao J., Mejias, J., Quentin, M., Chen, Y., de Almeida-Engler, J., Mao, Q., Sun, Q., Liu, Q., Xie, B., Abad, P., Favery B*. Jian, H.* (2020). The root-knot nematode MiPDI1 effector targets a stress-associated protein SAP to establish disease in Solanaceae and Arabidopsis. New Phytologist, 228: 1417–1430. https://doi.org/10.1111/nph.16745, PMID: 32542658.
• Mateille T., Tavoillot J., Goillon C., Parès L., Lefèvre A., Védie H., Navarrete M., Palloix A., Sage-Palloix A.M., Castagnone-Sereno P., Fazari A., Marteu N., Djian-Caporalino C., 2020. Competitive interaction in plant-parasitic nematode communities affecting organic vegetable cropping systems. Crop Protection 135: 1-6. DOI : 10.1016/j.cropro.2020.105206
• Nilusmas S., Mercat M., Perrot T., Djian-Caporalino C., Castagnone-Sereno P., Touzeau S.,  Calcagno V., and Mailleret L., 2020. Multi-seasonal modelling of plant-nematode interactions reveals efficient plant resistance deployment strategies. Evolutionary Applications, 13 (9): 2206-2221, doi.org/10.1111/eva.12989.
• Rodriguez-Heredia M, Djian-Caporalino C., Ponchet M., Lapeyre L., Canaguier R., Fazari A., Marteu N., Industri B., Offroy-Chave M., 2020. Protective effects of mycorrhizal association in tomato and pepper against Meloidogyne incognita infection, and mycorrhizal networks for early mycorrhization of low mycotrophic plants. Phytopatologia Mediterranea 59(2): 377-384. DOI: 10.14601/Phyto-11637.

2019

• Djian-Caporalino, C., Navarrete, M., Fazari, A., Baily-Bechet, M., Marteu, N., Dufils, A., Tchamitchian, M., Lefèvre, A., Pares, L., Mateille, T., et al. (2019). Conception et évaluation de systèmes de culture maraîchers méditerranéens innovants pour gérer les nématodes à galles. Biotechnol. Agron. Soc. Environ. DOI: 10.25518/1780-4507.17725
• Duval, H., Van Ghelder, C., Portier, U., Confolent, C., Meza, P. and Esmenjaud, D. (2019). New data completing the spectrum of the Ma, RMia, and RMja genes for resistance to root-knot nematodes (Meloidogyne spp.) in Prunus. Phytopathology 109(4):615-622. doi: 10.1094/PHYTO-05-18-0173-R.
• Van Ghelder, C., Parent, G.J., Rigault, P., Prunier, J., Giguère, I., Caron, S., Stival Sena, J., Deslauriers, A., Bousquet, J., Esmenjaud, D. and MacKay, J. (2019). The large repertoire of conifer NLR resistance genes includes drought responsive and highly diversified RNLs. Scientific Reports 9 :11614. doi: 10.1038/s41598-019-47950-7.
• Djian-Caporalino C., Mateille T., Bailly Bechet M., Marteu N., Fazari A., Bautheac P., Raptopoulo A., Van Duong L., Tavoillot J., Martiny B., Goillon C., Castagnone-Sereno P., 2019. Evaluating sorghums as green manure against root-knot nematodes. Crop Protection 122: 142-150 doi:10.1016/j.cropro.2019.05.002

2018

• Allasia, V., Industri, B., Ponchet, M., Quentin, M., Favery, B., and Keller, H. (2018). Quantification of Salicylic Acid (SA) and SA-glucosides in Arabidopsis thaliana. BIO-PROTOCOL 8. DOI: 10.21769/BioProtoc.2844
• Barbosa, E.A., Bonfim Junior, M.F., Bloch Jr., C., Rocha, T.L., Engler, G., and de Almeida Engler, J. (2018). Imaging mass spectrometry of endogenous polypeptides and secondary metabolites from galls induced by root-knot nematodes in tomato roots. MPMI. DOI: 10.1094/MPMI-02-18-0049-R
• Blanchard, A., Guégnard, F., Charvet, C.L., Crisford, A., Courtot, E., Sauvé, C., Harmache, A., Duguet, T., O’Connor, V., Castagnone-Sereno, P., et al. (2018). Deciphering the molecular determinants of cholinergic anthelmintic sensitivity in nematodes: When novel functional validation approaches highlight major differences between the model Caenorhabditis elegans and parasitic species. PLOS Pathogens 14, e1006996. DOI: 10.1371/journal.ppat.1006996
• Jaouannet, M., Nguyen, C.-N., Quentin, M., Jaubert-Possamai, S., Rosso, M.-N., and Favery, B. (2018). In situ Hybridization (ISH) in Preparasitic and Parasitic Stages of the Plant-parasitic Nematode Meloidogyne spp. BIO-PROTOCOL 8. DOI: 10.21769/BioProtoc.2766
• Mattos, V.S. da, Cares, J.E., Gomes, C.B., Gomes, A.C.M.M., Monteiro, J. da M. dos S., Gomez, G.M., Castagnone-Sereno, P., and Carneiro, R.M.D.G. (2018). Integrative Taxonomy of Meloidogyne oryzae (Nematoda: Meloidogyninae) parasitizing rice crops in Southern Brazil. Eur J Plant Pathol 151, 649–662. DOI: 10.1007/s10658-017-1400-9
• Medina, C., da Rocha, M., Magliano, M., Raptopoulo, A., Marteu, N., Lebrigand, K., Abad, P., Favery, B., and Jaubert-Possamai, S. (2018). Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita. BMC Genomics 19, 943. DOI: 10.1186/s12864-018-5296-3
• Mota, A.P.Z., Vidigal, B., Danchin, E.G.J., Togawa, R.C., Leal-Bertioli, S.C.M., Bertioli, D.J., Araujo, A.C.G., Brasileiro, A.C.M., and Guimaraes, P.M. (2018). Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance. BMC Plant Biology 18, 159. DOI: 10.1186/s12870-018-1373-7
• Mougin, C., Artige, E., Marchand, F., Mondy, S., Ratié, C., Sellier, N., Castagnone-Sereno, P., D’Acier, A.C., Esmenjaud, D., Faivre-Primot, C., et al. (2018). BRC4Env, a network of Biological Resource Centres for research in environmental and agricultural sciences. Environ Sci Pollut Res 1–9. DOI: 10.1007/s11356-018-1973-7
• Naalden, D., Haegeman, A., Almeida‐Engler, J. de, Eshetu, F.B., Bauters, L., and Gheysen, G. (2018). The Meloidogyne graminicola effector Mg16820 is secreted in the apoplast and cytoplasm to suppress plant host defense responses. Molecular Plant Pathology 19, 2416–2430. DOI: 10.1111/mpp.12719
• Nguyen, C-N., Perfus-Barbeoch-Zurletto, L., Quentin, M., Zhao, J., Magliano, M., Marteu, N., Da Rocha, M., Nottet, N., Abad, P. & Favery, B. (2018) A root-knot nematode small glycine and cysteine-rich secreted effector, MiSGCR1, is involved in plant parasitism. New Phytologist 217: 687-699. PMID: 29034957
• Pratx, L., Rancurel, C., Da Rocha, M., Danchin, E.G.J., Castagnone-Sereno, P., Abad, P., and Perfus-Barbeoch, L. (2018). Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species. BMC Genomics 19, 321. DOI: 10.1186/s12864-018-4686-x
• Różańska, E., Czarnocka, W., Baranowski, Ł., Mielecki, J., Engler, J. de A., and Sobczak, M. (2018). Expression of both Arabidopsis γ-tubulin genes is essential for development of a functional syncytium induced by Heterodera schachtii. Plant Cell Rep 1–14. DOI: 10.1007/s00299-018-2312-7
• Vitale, S., Luongo, L., Danchin, E.G.J., Mughini, G., Gras, M., Galli, M., and Belisario, A. (2018). Teratosphaeria stem canker disease on Eucalypt in Italy. Eur J Plant Pathol. DOI: 10.1007/s10658-018-1577-6
• Wang, X., Fazari, A., Cao, Y., Zhang, Z., Palloix, A., Mao, S., Zhang, B., Djian-Caporalino, C., and Wang, L. (2018). Fine mapping of the root-knot nematode resistance gene Me1 in pepper (Capsicum annuum L.) and development of markers tightly linked to Me1. Mol Breeding 38, 39. DOI: 10.1007/s11032-018-0793-2
• Yi-Lun Tsai, A., Higaki, T., Nguyen, C.-N., Perfus-Barbeoch, L., Favery, B., and Sawa, S. (2018). Regulation of Root-Knot Nematode Behavior by Seed Coat Mucilage-Derived Attractants. Molecular Plant. DOI: 10.1016/j.molp.2018.11.008
• Van Ghelder, C., Esmenjaud, D., Callot, C., Dubois, E., Mazier, M. and Duval, H. (2018). Ma orthologous genes in Prunus spp. shed light on a noteworthy NBS-LRR cluster conferring differential resistance to root-knot nematodes. Frontiers in Plant Sciences. 9:1269. doi: 10.3389/fpls.2018.01269.
• Djian-Caporalino C. &  Mateille T., 2018. Impact des communautés de nématodes phytoparasites sur la durabilité de systèmes de culture maraîchers visant spécifiquement le contrôle des nématodes à galles: de la pertinence d’une approche ‘diversité’. Innovations Agronomiques 69: 83-89. doi:10.15454/LC72B5

2017

• Blanc-Mathieu, R., Perfus-Barbeoch, L., Aury, J.-M., Rocha, M.D., Gouzy, J., Sallet, E., Martin-Jimenez, C., Bailly-Bechet, M., Castagnone-Sereno, P., Flot, J.-F., et al. (2017). Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. PLOS Genetics 13, e1006777. DOI: 10.1371/journal.pgen.1006777
• Danchin, E.G.J., Perfus-Barbeoch, L., Rancurel, C., Thorpe, P., Da Rocha, M., Bajew, S., Neilson, R., (Guzeeva), E.S., Da Silva, C., Guy, J., et al. (2017). The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes. Genes 8, 287. DOI : 10.3390/genes8100287
• Díaz‐Manzano Fernando E., Cabrera Javier, Ripoll Juan‐José, Olmo Iván, Andrés Mari Fe, Silva Ana Cláudia, Barcala Marta, Sánchez María, Ruíz‐Ferrer Virginia, Almeida‐Engler Janice, et al. (2017). A role for the gene regulatory module microRNA172/TARGET OF EARLY ACTIVATION TAGGED 1/FLOWERING LOCUS T (miRNA172/TOE1/FT) in the feeding sites induced by Meloidogyne javanica in Arabidopsis thaliana. New Phytologist 217, 813–827. DOI: 10.1111/nph.14839
• Guimaraes, L.A., Mota, A.P.Z., Araujo, A.C.G., Figueiredo, L.F. de A., Pereira, B.M., Saraiva, M.A. de P., Silva, R.B., Danchin, E.G.J., Guimaraes, P.M., and Brasileiro, A.C.M. (2017). Genome-wide analysis of expansin superfamily in wild Arachis discloses a stress-responsive expansin-like B gene. Plant Mol Biol 1–18. DOI: 10.1007/s11103-017-0594-8
• Harper, M., Knight, V., Jones, M., Koutsovoulos, G., Glynatsi, N.E., and Campbell, O. (2017). Reinforcement learning produces dominant strategies for the Iterated Prisoner’s Dilemma. PLOS ONE 12, e0188046. DOI: 10.1371/journal.pone.0188046
• Junior, A. de S., Dijair, J., Pierre, O., Coelho, R.R., Grossi-de-Sa, M.F., Engler, G., and de Almeida Engler, J. (2017). Application of Nuclear Volume Measurements to Comprehend the Cell Cycle in Root-Knot Nematode-Induced Giant Cells. Front. Plant Sci. 8. DOI: 10.3389/fpls.2017.00961
• Medina, C., Da Rocha, M., Magliano, M., Raptopoulo, A., Revel, B., Marteu, N., Magnone, V., Cabrera, J., Barcala, M., Pereira da Silva, A., Escobar, C., Abad, P., Favery, B., Jaubert-Possamai, S. (2017). Characterisation of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematodes Meloidogyne incognita. New Phytologist 216: 882–896.
• Medina, I.L., Gomes, C.B., Correa, V.R., Mattos, V.S., Castagnone-Sereno, P., and Carneiro, R.M.D.G. (2017). Genetic diversity of Meloidogyne spp. parasitising potato in Brazil and aggressiveness of M. javanica populations on susceptible cultivars. Nematology 19, 69–80. DOI: 10.1163/15685411-00003032
• Monteiro, Jessica M.S.; Cares, Juvenil E.; Correa, Valdir R.; Pinheiro, Jadir B.; Mattos, Vanessa S.; Silva, Joelma G.P.; Gomes, Ana C.M.M.; Santos, Marcilene F.A.; Castagnone-Sereno, Philippe; Carneiro, Regina M.D.G.: Meloidogyne brasiliensis Charchar & Eisenback, 2002 is a junior synonym of M. ethiopica Whitehead, 1968', Nematology, 2017, DOI: 10.1163/15685411-00003078
• Nilusmas, S., Mercat, M., Perrot, T., Touzeau, S., Calcagno, V., Djian Caporalino, C., Castagnone-Sereno, P., and Mailleret, L. (2017). A multi-seasonal model of plant-nematode interactions and its use to identify durable plant resistance deployment strategies. Acta Horticulturae 211–218. DOI: 10.17660/ActaHortic.2017.1182.25
• Petitot, A.-S., Kyndt, T., Haidar, R., Dereeper, A., Collin, M., de Almeida Engler, J., Gheysen, G., and Fernandez, D. Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance in monocots. Ann Bot. DOI: 10.1093/aob/mcw256
• Rafael R.R.D. Negretti; Cesar B. Gomes; Vanessa S. Mattos; Lúcia Somavilla; Roberta Manica-Berto; Dirceu Agostinetto; Philippe Castagnone-Sereno and Regina M.D.G. Carneiro (2017). Characterisation of a Meloidogyne species complex parasitising rice in southern Brazil. Nematology 19, 403–412. DOI: 10.1163/15685411-00003056
• Ramos Coelho, R., Vieira, P., Antonino de Souza Júnior, J.D., Martin-Jimenez, C., De Veylder, L., Cazareth, J., Engler, G., Grossi-de-Sa, M.F., and de Almeida Engler, J. (2017). Exploiting cell cycle inhibitor genes of the KRP family to control root-knot nematode induced feeding sites in plants. Plant, Cell & Environment. Doi: 10.1111/pce.12912
• Rancurel, C., Legrand, L., and Danchin, E.G.J. (2017). Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life. Genes 8, 248. DOI: 10.3390/genes8100248
• Santos, M.F.A., Correa, V.R., Peixoto, J.R., Mattos, V.S., Silva, J.G.P., Moita, A.W., Salgado, S.M.L., Castagnone-Sereno, P., and Carneiro, R.M.D.G. Genetic variability of Meloidogyne paranaensis populations and their aggressiveness to susceptible coffee genotypes. Plant Pathol . DOI: 10.1111/ppa.12718
• Vieira, P., and de Almeida Engler, J. (2017). Plant Cyclin-Dependent Kinase Inhibitors of the KRP Family: Potent Inhibitors of Root-Knot Nematode Feeding Sites in Plant Roots. Front. Plant Sci. 8. DOI: 10.3389/fpls.2017.01514
• Nilusmas S., Mercat M., Perrot T., Touzeau S., Calcagno V.,  Djian Caporalino C., Castagnone-Sereno P., Mailleret L., 2017. A multi-seasonal model of plant-nematode interactions and its use to identify durable plant resistance deployment strategies. Acta Horticulturae, 1182: 211-218. DOI: 10.17660/ActaHortic.2017.1182.25
• Wang X., Fazari A., Cao Y., Zhang Z., Palloix A., Mao S., Zhang B., Djian-Caporalino C.,Wang L., 2017. Fine mapping of the root-knot nematode resistance gene Me1 in pepper (Capsicum annuum L.) and development of markers tightly linked to Me1. Molecular breeding 38:39. doi: 10.1007/s11032-018-0793-2.

2016

• Baldacci-Cresp, F., Sacré, P.-Y., Twyffels, L., Mol, A., Vermeersch, M., Ziemons, E., Hubert, P., Pérez-Morga, D., El Jaziri, M., Engler, J. de A., et al. (2016). Poplar–Root Knot Nematode Interaction: A Model for Perennial Woody Species. MPMI 29, 560–572.
• Blanc-Mathieu, R., Perfus-Babeoch, L., Aury, J.-M., Rocha, M.D., Gouzy, J., Sallet, E., Martin-Jimenez, C., Castagnone-Sereno, P., Flot, J.-F., Kozlowski, D., et al. (2016). Peculiar hybrid genomes of devastating plant pests promote plasticity in the absence of sex and meiosis. bioRxiv 046805. DOI: 10.1101/046805
• Cabrera J., Barcala M., García A., Rio-Machín A., Medina C., Jaubert-Possamai S., Favery B., Maizel A., Ruiz-Ferrer V., Fenoll C., Escobar C (2016) Differentially expressed plant small RNAs in Arabidopsis galls formed by Meloidogyne javanica: a functional role for miR390 and its TAS3-derived tasiRNAs. New Phytologist, 209(4):1625-1640.
• Damiani I., Drain A., Guichard M., Balzergue S., Boscari A., Boyer J-C, Brunaud V., Cottaz S., Rancurel C., Da Rocha M., Fizames C., Fort S., Gaillard I., Danchin E.G.J., Maillol V., Rouached H., Samain E., Su Y-H, Thouin J., Touraine B., Puppo A., Frachisse J-M, Pauly N., Sentenac H. (2016). Nod factor effects on root hair-specific transcriptome of Medicago truncatula: focus on plasma membrane transport systems and reactive oxygen species networks. Front. Plant Sci. 7, 794. DOI: 10.3389/fpls.2016.00794
• Danchin, E.G.J., Guzeeva, E.A., Mantelin, S., Berepiki, A., and Jones, J.T. (2016). Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode Globodera pallida to feed on host-derived sucrose. Mol Biol Evol msw041. DOI: 10.1093/molbev/msw041
• Díaz-Manzano, F.E., Barcala, M., Engler, G., Fenoll, C., de Almeida-Engler, J., and Escobar, C. (2016). A Reliable Protocol for In situ microRNAs Detection in Feeding Sites Induced by Root-Knot Nematodes. Front Plant Sci 7, 966. DOI: 10.3389/fpls.2016.00966
• Eves-van den Akker, S., Laetsch, D.R., Thorpe, P., Lilley, C.J., Danchin, E.G.J., Da Rocha, M., Rancurel, C., Holroyd, N.E., Cotton, J.A., Szitenberg, A., et al. (2016). The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology 17, 124. Doi: 10.1186/s13059-016-0985-1
• Fatouros, N.E., Cusumano, A., Danchin, E.G.J., and Colazza, S. (2016). Prospects of herbivore egg-killing plant defenses for sustainable crop protection. Ecol Evol 6, 6906–6918.
• Favery, B, Quentin, M., Jaubert-Possamai, S.; Abad, P. (2016). Gall-forming root-knot nematodes hijack key plant cellular functions to induce multinucleate and hypertrophied feeding cells. J. Insect Physiol. Vol 84, 60-69.
• Fernandez, D., Petitot, A.-S., Grossi de Sá, M., Nguyễn, V.P., de Almeida Engler, J., and Kyndt, T. (2015). Chapter Eight - Recent Advances in Understanding Plant–Nematode Interactions in Monocots. In Advances in Botanical Research, C.E. and C. Fenoll, ed. (Academic Press), pp. 189–219.
• Hanemian, M., Barlet, X., Sorin, C., Yadeta, K.A., Keller, H., Favery, B., Simon, R., Thomma, B.P.H.J., Hartmann, C., Crespi, M., et al. (2016). Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway. New Phytol. DOI: 10.1111/nph.13913
• Keller, H., Boyer, L., and Abad, P. (2016). Disease susceptibiliy in the zig-zag model of host-microbe Interactions: Only a consequence of immune suppression? Molecular Plant Pathology. DOI: 10.1111/mpp.12371
• Kyndt, T., Goverse, A., Haegeman, A., Warmerdam, S., Wanjau, C., Jahani, M., Engler, G., Engler, J. de A., and Gheysen, G. (2016). Redirection of auxin flow in Arabidopsis thaliana roots after infection by root-knot nematodes. J. Exp. Bot. erw230. DOI: 10.1093/jxb/erw230
• Quentin, M., Baurès, I., Hoefle, C., Caillaud, M.-C., Allasia, V., Panabières, F., Abad, P., Hückelhoven, R., Keller, H., and Favery, B. (2016). The Arabidopsis microtubule-associated protein MAP65-3 supports infection by filamentous biotrophic pathogens by down-regulating salicylic acid-dependent defenses. J. Exp. Bot. erv564. DOI: 10.1093/jxb/erv564
• Rodiuc N, Barlet X, Hok S, Engler G, Perfus-Barbeoch L, Seassau A, Marteu, N., de Almeida-Engler J, Panabières F, Abad P, Kemmerling B, Marco Y, Favery B.*, Keller H.* (*co-corresponding authors) (2016) Evolutionarily distant pathogens require the Arabidopsis phytosulfokine signalling pathway to establish disease. Plant Cell and Environment, 39, 1396–1407. DOI: 10.1111/pce.12627
• Saucet, S.B., Van Ghelder, C., Abad, P., Duval, H., and Esmenjaud, D. (2016). Resistance to root-knot nematodes Meloidogyne spp. in woody plants. New Phytol. DOI: 10.1111/nph.13933
• Shelomi, M., Danchin, E.G.J., Heckel, D., Wipfler, B., Bradler, S., Zhou, X., and Pauchet, Y. (2016). Horizontal Gene Transfer of Pectinases from Bacteria Preceded the Diversification of Stick and Leaf Insects. Scientific Reports 6, 26388. DOI: 10.1038/srep26388
• Van Ghelder, C., and Esmenjaud, D. (2016). TNL genes in peach: insights into the post-LRR domain. BMC Genomics 17, 317. DOI: 10.1186/s12864-016-2635-0
• Barbary A., Djian-Caporalino C., Castagnone-Sereno P., Marteu N., Fazari A., Caromel B., Palloix A., 2016. Plant genetic background increasing the efficiency and durability of major resistance genes to root knot nematodes can be resolved into a few resistance QTLs. Front. Plant Sci. 7:632. (9 pages) doi: 10.3389/fpls.2016.00632
• Navarrete M., Djian-Caporalino C., Mateille T., Palloix A., Sage-Palloix A.M., Lefèvre A., Fazari A., Marteu N., Tavoillot J., Dufils A., Furnion C., Pares L., Forest I., 2016. A resistant pepper used as a trap cover crop in vegetable production strongly decreases root-knot nematode infestation in soil. Agronomy and Sustainable Development, 36 (4):68-78, Online. DOI 10.1007/s13593-016-0401-y